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Blastn中的E值
發布日期:2023-01-05 09:46:33


Blastn中的E值


在用 blastn 搜索時,通過輸入的核苷酸序列,我們會從數據庫中得到最為接近的核苷酸序列。盡管我們已經在界面上選了相應的 E 值,仍然得到了 E 值不同的核苷酸序列。這是因為

 

E 值代表被比對的兩個序列不相關的可能性, E 值最低的最有意義,也就是說序列的相似性最大。設定的 E 值是我們限定的上限, E 值太高的就不顯示了。

 

以下是英文解釋,有興趣的網友可以看看:

 

E-value means "expected value", which means:The EXPECTED probability of two random generated sequences appears exactly the way like the two sequences you are BLASTing. That is a statistical concept, if the E-value is high, then this sequence may appear in your BLAST result by random, the probability is exactly the E-value. If the E-value is low, then this result is of high fidelity.
When you input an E-value in BLAST, you set up an upper-bound of E-value, any result below this value will appear. That is the reason why many sequence will apear with different E-values, and the ones with lowest values will appear at the front of all results.

 


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